Structurexplor: a platform for the exploration of structural features of RNA secondary structures
نویسندگان
چکیده
Summary Discovering function-related structural features, such as the cloverleaf shape of transfer RNA secondary structures, is essential to understand RNA function. With this aim, we have developed a platform, named Structurexplor, to facilitate the exploration of structural features in populations of RNA secondary structures. It has been designed and developed to help biologists interactively search for, evaluate and select interesting structural features that can potentially explain RNA functions. Availability and implementation Structurxplor is a web application available at http://structurexplor.dinf.usherbrooke.ca. The source code can be found at http://jpsglouzon.github.io/structurexplor/. Contact [email protected]. Supplementary information Supplementary data are available at Bioinformatics online.
منابع مشابه
Relation Between RNA Sequences, Structures, and Shapes via Variation Networks
Background: RNA plays key role in many aspects of biological processes and its tertiary structure is critical for its biological function. RNA secondary structure represents various significant portions of RNA tertiary structure. Since the biological function of RNA is concluded indirectly from its primary structure, it would be important to analyze the relations between the RNA sequences and t...
متن کاملPhysicochemical Position-Dependent Properties in the Protein Secondary Structures
Background: Establishing theories for designing arbitrary protein structures is complicated and depends on understanding the principles for protein folding, which is affected by applied features. Computer algorithms can reach high precision and stability in computationally designing enzymes and binders by applying informative features obtained from natural structures. Methods: In this study, a ...
متن کاملPreRkTAG: Prediction of RNA Knotted Structures Using Tree Adjoining Grammars
Background: RNA molecules play many important regulatory, catalytic and structural <span style="font-variant: normal; font-style: norma...
متن کاملDetermination of unstable tectonic zones in C–North deposit, Sangan, NE Iran using GPR method: importance of structural geology
Ground Penetrating Radar (GPR) is an effective and practical geophysical imaging tool, with a wide set of applications in geological mapping of subsurface information. This research study aims at determination of the geophysical parameter differences in the subsurface geological structures and construction of a 3D fracture model. GPR and resistivity methods were applied to detect the unstable t...
متن کاملEffect of Pile Scouring on the Structural Behavior of a Fixed Jacket Platform with Consideration of Non-linear Pile Seabed Interaction
In offshore structures, most of failures are caused by the lack of sufficient piles strength. Scour phenomena affects the load transition and the pile strength. The necessity of the consideration of scouring phenomena amplifies when the scour depth becomes remarkable, which can endanger the jacket stability. In this paper, a new method is used to consider the pile scouring using nonlinear pusho...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Bioinformatics
دوره 33 19 شماره
صفحات -
تاریخ انتشار 2017